Table 1 Sample set and sequencing data summary
Sample | Wood dust | Exposure level | Exposure probability | Exposure type | Tobacco | Subtype | Tumor cell % | No. of libraries | Coverage (avg) | Coverage (sd) | Coverage (median) | Duplicate% |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
SNC12 | exposed | medium | probable | S, H | NA | ITAC | 50 | 1 | 30.3 | 69.2 | 29 | 13.8 |
SNC19 | exposed | medium | definite | S | smoker | ITAC | 20 | 1 | 34.3 | 69.9 | 33 | 16.3 |
SNC41 | non-exposed | no exposure | no exposure | no exposure | non-smoker | ITAC | 40 | 2 | 31 | 72.7 | 30 | 11.4 |
SNC48 | non-exposed | no exposure | no exposure | no exposure | NA | non-ITAC | 90 | 4 | 67.2 | 154.2 | 64 | 10.6 |
SNC72 | non-exposed | no exposure | no exposure | no exposure | smoker | non-ITAC | 25 | 2 | 33.8 | 96.2 | 32 | 11.3 |
SNC78 | exposed | medium | probable | S, H | NA | ITAC | 40 | 1 | 34.3 | 66 | 31 | 15 |
SNC105 | exposed | medium | definite | S, H | smoker | ITAC | 30 | 1 | 29.4 | 62.3 | 27 | 17.4 |
SNC131 | exposed | low | definite | S, H | NA | non-ITAC | 60 | 5 | 54.2 | 131.4 | 47 | 10.2 |
SNC142 | exposed | medium | definite | S, H | NA | ITAC | 30 | 3 | 82.9 | 164.1 | 79 | 10.2 |
SNC176 | exposed | medium | definite | S, H | non-smoker | non-ITAC | 80 | 1 | 36.5 | 66.4 | 33 | 14.6 |
SNC186 | non-exposed | low | possible | no exposure | non-smoker | non-ITAC | 90 | 4 | 53.6 | 121 | 48 | 10.1 |
SNC214 | exposed | medium | definite | S, H | smoker | ITAC | 70 | 5 | 84.4 | 196.7 | 78 | 7.5 |
SNC215 | non-exposed | no exposure | no exposure | no exposure | smoker | non-ITAC | 80 | 2 | 47.1 | 129.4 | 42 | 20.6 |
SNC229 | exposed | medium | probable | S, H | smoker | ITAC | 70 | 4 | 62.4 | 147.6 | 58 | 11.3 |
SNC232 | non-exposed | no exposure | no exposure | no exposure | non-smoker | non-ITAC | 80 | 1 | 28.6 | 63.5 | 27 | 12.4 |
SNC233 | exposed | medium | definite | S | smoker | non-ITAC | 70 | 1 | 30.7 | 72.6 | 29 | 11.9 |